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Use this ratings chart to review and compare the different genetic variations associated with Breast Cancer and tested by home DNA testing providers. These findings are the result of an independent comparison of personal genomic company public information.
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Breast Cancer
Genetic Variation Companies References*
Chromosome or Locus
Gene
SNP
deCODEme Navigenics 23andMe Gene Essence deCODEme Navigenics 23andMe
16q12 TNRC9/TOX3 rs3803662 checkmark checkmark checkmark   8 8 4,7,8
2q35   rs13387042 checkmark checkmark   8 8  
10 FGFR2 rs2981582 checkmark checkmark    4 4 
11p15 LSP1 rs3817198 checkmark checkmark     4 4  
2 CASP8 rs1045485  checkmark      2 
1p11   rs11249433 checkmark       10  
10 FGFR2 rs1219648   checkmark     3,4,5,6
chr8.128424800   rs13281615   checkmark      4
2 CASP8 rs17468277 checkmark     2  
10 FGFR2 rs2420946     checkmark     3,4,5,6
5 MRPS30 rs4415084 checkmark      9  
5 MAP3K1 rs4700485 checkmark       4   
3 NEK10 rs4973768 checkmark      1  
8q24   rs672888 checkmark       4   
5 MAP3K1 rs889312  checkmark     4 
14 RAD51L1 rs999737 checkmark       10   

Genes analyzed by Pathway Genomics (specific SNPs not available)

CHEK2, PALB2, CASP8, MSRP30, FGFR2, ESR1, RNF146, TNRC9, LSP1, AKAP9, MAP3K1

*Research references cited by companies:

1. Ahmed, S et al. Nat Genet. 2009 Mar;41(3):324-8. Epub 2009 Feb 15.
2. Cox, A et al. Nat Genet. 2007 Mar;39(3):352-8. Epub 2007 Feb 11.
3. Dickson et al. (2000) Breast Cancer Res 2(3):191-6.
4. Easton, DF et al. Nature. 2007 Jun 28;447(7148).
5. Hunter et al. (2007) Nat Genet 39(7):870-4.
6. Moffa and Ethier (2007) J Cell Physiol 210(3):720-31.
7. Smid et al. (2006) J Clin Oncol 24(15):2261-7.
8. Stacey, SN et al. Nat Genet. 2007 Jul;39(7):865-9.
9. Stacey, SN et al. Nat Genet. 2008 Jun;40(6):703-6.
10. Thomas, G et al. Nat Genet. 2009 Mar 29.

Sources:

http://demo.decodeme.com/health-watch/details/BCRS

https://www.23andme.com/you/journal/breastcancer/techreport/

http://www.navigenics.com/demo/for_scientists/d/breast_cancer/


Last updated 01/22/2010
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Please note that the information is not exhaustive, is based on cursory reviews of each personal genomic company's website and will be updated periodically.
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