Use this ratings chart to review and compare the different genetic variations associated with
Prostate Cancer and tested by home DNA testing providers. These findings are the result of an independent comparison of personal genomic company public information.
| Genetic Variation | Companies | References* |
Chromosome or Locus
| Gene
| SNP
| deCODEme | Navigenics | 23andMe | Gene Essence | deCODEme | Navigenics | 23andMe |
| 8q24 region 3 |
POU5F1P1 |
rs6983267 |
|
|
|
|
20 |
20 |
3,10,20,21,22 |
| 8q24 region 1 |
|
rs1447295 |
|
|
|
| 6 |
20 |
2,3,5,6,14,15,16,18,20,22 |
| 17q24.3 |
|
rs1859962 |
|
|
| | 7 |
7 |
7,22 |
| 17q12 |
TCF2 |
rs4430796 |
|
|
|
|
7 |
7 |
7,22 |
| 7 |
JAZF1 |
rs10486567 |
|
| | |
17 |
17 | |
| 8q24 region 2 |
|
rs10505483 |
|
|
|
|
6 |
| 3,6,10,13,19,22 |
| 11q13 |
|
rs10896449 |
|
| | |
17 |
17 | |
| 8q24 region 2 |
|
rs16901979 |
| |
| |
| 6 |
|
| 8q24 |
|
rs10086908 |
|
|
| | 1 |
|
|
| 2q31 |
|
rs10207654 |
|
| | |
4 |
| |
| |
|
rs10763546 |
|
| |
| | | |
| 3q21.3 |
|
rs10934853 |
|
|
| | 9 |
|
|
| 10 |
MSMB |
rs10993994 |
| |
| | 17 | | |
| |
|
rs12079081 |
| | |
|
| | |
| |
|
rs12194182 | | | |
| | | |
| 8p21 |
|
rs1512268 |
|
| | |
4 |
| |
| 8q24.21 |
|
rs16902104 |
|
|
| | 9 |
|
|
| |
|
rs17562004 |
| | | |
| | |
| |
|
rs1865866 |
| | |
| | | |
| 3p12 |
|
rs2660753 |
|
| | | 11 |
|
|
| 2 |
EHBP1 |
rs2710646 |
| | | |
8 |
| |
| 19 |
KLK2/KLK3 |
rs2735839 |
|
| | |
11 |
| |
| 5 |
TERT |
rs401681 |
|
| | |
12 | | |
| |
|
rs4242382 |
| | | |
| |
|
| |
|
rs4242384 |
|
| |
| | | |
| |
|
rs4568789 |
|
|
|
|
| | |
| |
|
rs4962416 |
|
| | |
|
17 |
|
| 22q13 |
|
rs5759167 |
|
| |
| 4 |
| |
| X |
NUDT11 |
rs5945572 |
| | |
|
8 | | |
| 8q24.21 |
|
rs620861 |
|
| | | 9 |
| |
| 7 |
LMTK2 |
rs6465657 |
| | | |
11 | | |
| |
|
rs6465658 |
|
| |
|
| | |
| |
|
rs6501455 | |
| |
| | | |
| |
|
rs7109672 |
| | | |
| | |
| 11p15 |
|
rs7127900 |
| | |
|
4 | | |
| 2p15 |
|
rs721048 |
| |
| | | 8 |
|
| 4q24 |
|
rs7679673 |
|
| | |
4 |
|
|
| |
|
rs7814837 |
| | | |
| |
|
| 8q24 region 2 |
|
rs7817677 |
| |
| | | | 3,6,10,13,19,22 |
| 19q13.2 |
|
rs8102476 |
|
| | |
9 |
| |
| |
|
rs902774 | | | | | | | |
| 6 |
SLC22A3 |
rs9364554 |
|
| | | 11 |
| |
| |
|
rs9643226 | | | |
| | | |
Genes analyzed by Pathway Genomics (specific
SNPs not available)
JAZF1, MSMB, DAB21P, TERT, CLPTM1L, CTBP2, NUDT11, LMTK2, EHBP1, HNF1B, SLC22A3, TNRC6B
SNP analyzed by the Coriell Personalized Medicine Collaborative
rs16901979
*Research references cited by companies:
1. Al Olama AA, et al. Nat Genet. 2009 Sep 20.
2. Amundadottir et al. (2006) Nat Genet 38(6):652-8.
3. Cheng et al. (2008) Eur J Hum Genet Jan 30 [Epub ahead of print].
4. Eeles RA, et al. Nat Genet. 2009 Sep 20.
5. Freedman et al. (2006) Proc Natl Acad Sci U S A 103(38):14068-73.
6. Gudmundsson, J et al. Nat Genet. 2007 May;39(5):631-7. Epub 2007 Apr 1.
7. Gudmundsson, J et al. Nat Genet. 2007 Aug;39(8):977-83. Epub 2007 Jul 1.
8. Gudmundsson, J et al. Nat Genet. 2008 Mar;40(3):281-3. Epub 2008 Feb 10.
9. Gudmundsson J, et al. Nat Genet. 2009 Sep 20.
10. Haiman et al. (2007) Nat Genet 39(5):638-44.
11. Kote-Jarai, Z et al. Cancer Epid Biomarkers Prev. 2008 Aug;17(8):2052-61.
12. Rafnar, T et al. Nat Genet. 2009 Feb;41(2):221-7. Epub 2009 Jan 18.
13. Robbins et al. (2007) Genome Res [Epub ahead of print].
14. Schumacher et al. (2007) Cancer Res 67(7):2951-2956.
15. Severi et al. (2007) Cancer Epidemiol Biomarkers Prev 16(3):610-2.
16. Suuriniemi et al. (2007) Cancer Epidemiol Biomarkers Prev 16(4):809-14.
17. Thomas, G et al. Nat Genet. 2008 Mar;40(3):310-5. Epub 2008 Feb 10.
18. Wang et al. (2007) Cancer Res 67(7):2944-50.
19. Witte et al. (2007) Nat Genet 39(5):579-80.
20. Yeager, M et al. Nat Genet. 2007 May;39(5):645-9. Epub 2007 Apr 1.
21. Zheng et al. (2007) J Natl Cancer Inst 99(20):1525-33.
22. Zheng et al. (2008) N Engl J Med Jan 16 [Epub ahead of print].
Sources:
http://demo.decodeme.com/health-watch/details/PCA
https://www.23andme.com/you/journal/prostate/techreport/
http://www.navigenics.com/demo/for_scientists/d/prostate_cancer/
http://www.geneessence.com/bmsa_0000/bmsa0000/pc.html
Last updated 01/22/2010
Please note that the information is not exhaustive, is based on cursory reviews of each personal genomic company's website and will be updated periodically.