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Use this ratings chart to review and compare the different genetic variations associated with Rheumatoid Arthritis and tested by home DNA testing providers. These findings are the result of an independent comparison of personal genomic company public information.
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Rheumatoid Arthritis
Genetic Variation Companies References*
Chromosome or Locus
Gene
SNP
deCODEme Navigenics 23andMe Gene Essence deCODEme Navigenics 23andMe
1 PTPN22 rs2476601 checkmark checkmark checkmark   2 2 2,3,5,7,8,12,13,14,16,17,18,23,24,29,31
9 trAF1/C5 rs3761847 checkmark checkmark checkmark   18 19 4,6,11,18,20,28,30,33
6 MHC rs6457617  checkmark checkmark checkmark   31 18, 31
chr6.138048197   rs6920220   checkmark   checkmark   31  
2 STAT4 rs7574865 checkmark checkmark     21 21 
    rs10118357       checkmark      
chr6.138007111   rs10499194  checkmark       19 
9   rs10733648       checkmark      
9 C5 rs10985112       checkmark      
    rs11162922       checkmark      
1 PADI4 rs11203366     checkmark       9,10,22,25,26
    rs11203367       checkmark      
    rs11761231      checkmark     
RA_6q23   rs13192841 checkmark       19    
    rs1748035       checkmark     
    rs1930780       checkmark      
    rs2104286       checkmark     
    rs2240335       checkmark      
RA_6q23   rs2327832 checkmark   checkmark   19    1,18,20,27,31
    rs2416804       checkmark      
    rs3087243       checkmark      
    rs3765598       checkmark      
    rs3816587       checkmark      
  MMEL1 rs3890745     checkmark       1,15,18,20,31
6 HLA-DRB1 rs660895 checkmark      18   
    rs6679677       checkmark      
    rs6684865      checkmark     
4 IL2 / IL21 rs6822844 checkmark       32    
    rs7026551       checkmark     
    rs743777       checkmark      
    rs7528684       checkmark      
    rs7582694       checkmark      
    rs9550642       checkmark      

*Research references cited by companies:

1. Barton et al. (2008) Nat Genet 40(10):1156-9.
2. Begovich, AB et al. Am J Hum Genet. 2004 Aug;75(2):330-7.
3. Bottini et al. (2004) Nat Genet 36(4):337-8.
4. Bradley and Pober (2001) Oncogene 20(44):6482-91.
5. Cloutier and Veillette (1999) J Exp Med 189(1):111-21.
6. Cooke et al. (1975) Arthritis Rheum 18(6):541-51.
7. Hinks et al. (2005) Arthritis Rheum 52(6):1694-9.
8. Hinks et al. (2007) Ann Rheum Dis 66(5):683-6.
9. Ikari et al. (2005) Arthritis Rheum 52(10):3054-7.
10. Kang et al. (2006) Arthritis Rheum 54(1):90-6.
11. Kurreeman et al. (2007) PLoS Med 4(9):e278.
12. Lee et al. (2005) Genes Immun 6(2):129-33.
13. Michou et al. (2007) Proc Natl Acad Sci U S A 104(5):1649-54.
14. Orozco et al. (2005) Arthritis Rheum 52(1):219-24.
15. Ouimet et al. (2000) Biochem Biophys Res Commun 271(3):565-70.
16. Pierer et al. (2006) Arthritis Res Ther 8(3):R75.
17. Plenge et al. (2005) Am J Hum Genet 77(6):1044-60.
18. Plenge, RM et al. N Engl J Med. 2007 Sep 20;357(12):1199-209.
19. Plenge, RM et al. Nat Genet. 2007 Dec;39(12):1477-82.
20. Raychaudhuri et al. (2008) Nat Genet 40(10):1216-23.
21. Remmers, EF et al. N Engl J Med. 2007 Sep 6;357(10):977-86.
22. Schellekens et al. (2000) Arthritis Rheum 43(1):155-63.
23. Simkins et al. (2005) Arthritis Rheum 52(7):2222-5.
24. Steer et al. (2005) Arthritis Rheum 52(1):358-60.
25. Suzuki et al. (2003) Nat Genet 34(4):395-402.
26. Takata et al. (2008) J Hum Genet 53(2):163-73.
27. Thomson et al. (2007) Nat Genet 39(12):1431-3.
28. Tsitsikov et al. (2001) Immunity 15(4):647-57.
29. van Oene et al. (2005) Arthritis Rheum 52(7):1993-8.
30. Wang et al. (2000) J Immunol 164(8):4340-7.
31. WTCCC, Nature. 2007 Jun 7;447(7145):661-78.
32. Zhernakova, A et al. Am J Hum Genet. 2007 Dec;81(6):1284-8.
33. Zvaifler (1973) Adv Immunol 16(0):265-336.

Sources:

http://demo.decodeme.com/health-watch/details/RA

https://www.23andme.com/you/journal/rheumarthritis/techreport/

http://www.navigenics.com/demo/for_scientists/d/rheumatoid_arthritis/

http://www.geneessence.com/bmsa_0000/bmsa0000/ra.html


Last updated 01/22/2010
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