Use this ratings chart to review and compare the different genetic variations associated with
Rheumatoid Arthritis and tested by home DNA testing providers. These findings are the result of an independent comparison of personal genomic company public information.
| Genetic Variation | Companies | References* |
Chromosome or Locus
| Gene
| SNP
| deCODEme | Navigenics | 23andMe | Gene Essence | deCODEme | Navigenics | 23andMe |
| 1 |
PTPN22 |
rs2476601 |
|
|
| | 2 |
2 |
2,3,5,7,8,12,13,14,16,17,18,23,24,29,31 |
| 9 |
trAF1/C5 |
rs3761847 |
|
|
|
|
18 |
19 |
4,6,11,18,20,28,30,33 |
| 6 |
MHC |
rs6457617 | |
|
|
|
|
31 |
18, 31 |
| chr6.138048197 |
|
rs6920220 |
|
|
|
|
|
31 |
|
| 2 |
STAT4 |
rs7574865 |
|
|
|
|
21 |
21 | |
| |
|
rs10118357 |
|
|
|
|
|
|
|
| chr6.138007111 |
|
rs10499194 | |
|
|
|
|
19 | |
| 9 |
|
rs10733648 |
| |
|
|
|
|
|
| 9 |
C5 |
rs10985112 |
|
|
|
|
|
|
|
| |
|
rs11162922 |
| |
| |
|
|
|
| 1 |
PADI4 |
rs11203366 |
|
|
|
|
|
|
9,10,22,25,26 |
| |
|
rs11203367 |
| | |
|
|
|
|
| |
|
rs11761231 | |
|
|
|
|
| |
| RA_6q23 |
|
rs13192841 |
|
|
|
|
19 |
|
|
| |
|
rs1748035 |
|
|
|
|
|
| |
| |
|
rs1930780 |
|
|
|
|
|
|
|
| |
|
rs2104286 |
|
|
|
|
|
| |
| |
|
rs2240335 |
|
|
|
|
|
|
|
| RA_6q23 |
|
rs2327832 |
|
|
|
|
19 |
|
1,18,20,27,31 |
| |
|
rs2416804 |
| |
|
|
|
|
|
| |
|
rs3087243 |
|
|
|
|
|
|
|
| |
|
rs3765598 |
|
|
|
|
|
|
|
| |
|
rs3816587 |
|
|
|
|
|
|
|
| |
MMEL1 |
rs3890745 |
|
|
|
|
|
|
1,15,18,20,31 |
| 6 |
HLA-DRB1 |
rs660895 |
|
|
| |
18 |
| |
| |
|
rs6679677 |
|
|
|
|
|
|
|
| |
|
rs6684865 | |
|
|
|
|
| |
| 4 |
IL2 / IL21 |
rs6822844 |
|
|
|
|
32 |
|
|
| |
|
rs7026551 |
|
|
|
|
|
| |
| |
|
rs743777 |
| |
|
|
|
|
|
| |
|
rs7528684 |
|
|
|
|
|
|
|
| |
|
rs7582694 |
|
|
|
|
|
|
|
| |
|
rs9550642 |
|
|
|
|
|
|
|
*Research references cited by companies:
1. Barton et al. (2008) Nat Genet 40(10):1156-9.
2. Begovich, AB et al. Am J Hum Genet. 2004 Aug;75(2):330-7.
3. Bottini et al. (2004) Nat Genet 36(4):337-8.
4. Bradley and Pober (2001) Oncogene 20(44):6482-91.
5. Cloutier and Veillette (1999) J Exp Med 189(1):111-21.
6. Cooke et al. (1975) Arthritis Rheum 18(6):541-51.
7. Hinks et al. (2005) Arthritis Rheum 52(6):1694-9.
8. Hinks et al. (2007) Ann Rheum Dis 66(5):683-6.
9. Ikari et al. (2005) Arthritis Rheum 52(10):3054-7.
10. Kang et al. (2006) Arthritis Rheum 54(1):90-6.
11. Kurreeman et al. (2007) PLoS Med 4(9):e278.
12. Lee et al. (2005) Genes Immun 6(2):129-33.
13. Michou et al. (2007) Proc Natl Acad Sci U S A 104(5):1649-54.
14. Orozco et al. (2005) Arthritis Rheum 52(1):219-24.
15. Ouimet et al. (2000) Biochem Biophys Res Commun 271(3):565-70.
16. Pierer et al. (2006) Arthritis Res Ther 8(3):R75.
17. Plenge et al. (2005) Am J Hum Genet 77(6):1044-60.
18. Plenge, RM et al. N Engl J Med. 2007 Sep 20;357(12):1199-209.
19. Plenge, RM et al. Nat Genet. 2007 Dec;39(12):1477-82.
20. Raychaudhuri et al. (2008) Nat Genet 40(10):1216-23.
21. Remmers, EF et al. N Engl J Med. 2007 Sep 6;357(10):977-86.
22. Schellekens et al. (2000) Arthritis Rheum 43(1):155-63.
23. Simkins et al. (2005) Arthritis Rheum 52(7):2222-5.
24. Steer et al. (2005) Arthritis Rheum 52(1):358-60.
25. Suzuki et al. (2003) Nat Genet 34(4):395-402.
26. Takata et al. (2008) J Hum Genet 53(2):163-73.
27. Thomson et al. (2007) Nat Genet 39(12):1431-3.
28. Tsitsikov et al. (2001) Immunity 15(4):647-57.
29. van Oene et al. (2005) Arthritis Rheum 52(7):1993-8.
30. Wang et al. (2000) J Immunol 164(8):4340-7.
31. WTCCC, Nature. 2007 Jun 7;447(7145):661-78.
32. Zhernakova, A et al. Am J Hum Genet. 2007 Dec;81(6):1284-8.
33. Zvaifler (1973) Adv Immunol 16(0):265-336.
Sources:
http://demo.decodeme.com/health-watch/details/RA
https://www.23andme.com/you/journal/rheumarthritis/techreport/
http://www.navigenics.com/demo/for_scientists/d/rheumatoid_arthritis/
http://www.geneessence.com/bmsa_0000/bmsa0000/ra.html
Last updated 01/22/2010
Please note that the information is not exhaustive, is based on cursory reviews of each personal genomic company's website and will be updated periodically.